BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002D05LP1|AL424952
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig309 485 e-137
3x_Contig306 198 1e-50
>3x_Contig309
Length = 1848
Score = 485 bits (230), Expect = e-137
Identities = 265/270 (98%), Gaps = 5/270 (1%)
Strand = Plus / Plus
Query: 611 aaagtttctcggaaaaagatggtttcctaggtgttacatgttgcttaggtagtagttagt 670
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 aaagtttctcggaaaaaga-ggtttcctag-tgttacatgttgcttaggtagtagttagt 58
Query: 671 agagagtactgatcaccggaccggtcaacgttctggggtgttttctactttgtagtggat 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 agagagtactgatcaccggaccggtcaacgttctggggtgttttctactttgtagtggat 118
Query: 731 cttctgcacaatccaggtgtacctcatcgcatcacatcgcatctgaaaacatacattttc 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cttctgcacaatccaggtgtacctcatcgcatcacatcgcatctgaaaacatacattttc 178
Query: 791 gtagttccttcctatttgggagatatttcgagctagtgtaaataaaatgaggatgg-aaa 849
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 179 gtagttccttcctatttgggagatatttcgagctagtgtaaataaaatgaggatggaaaa 238
Query: 850 ctgtgggagggt-acac-aaccacgtgaca 877
|||||||||||| |||| ||||||||||||
Sbjct: 239 ctgtgggagggtaacacaaaccacgtgaca 268
>3x_Contig306
Length = 1258
Score = 198 bits (94), Expect = 1e-50
Identities = 149/174 (85%)
Strand = Plus / Minus
Query: 392 gttcagttcggtctggyacccgttcccgtcatccagatgacgamcgtcgcgtaccacsgg 451
|||||||||||||||| |||||||||||||||| |||||| || ||| |||||| | ||
Sbjct: 175 gttcagttcggtctggtacccgttcccgtcatcaagatgaagaacgtagcgtacaaaggg 116
Query: 452 acgggtttcgggtatggcttmycgtcccgtyatcgtgtctcgmgggtgtctcagtcacsa 511
||||||||||||||||| || ||||||| ||||||||||| |||||| ||||| || |
Sbjct: 115 acgggtttcgggtatggattatggtcccgttatcgtgtctcgagggtgtttcagttacga 56
Query: 512 tggctgtctctctctccttttctctttgcygatyttctttcctactcttcaact 565
||||||| | ||| ||||||| | ||||| ||| || |||||||||||||||||
Sbjct: 55 tggctgtgtttctttccttttttttttgctgattttatttcctactcttcaact 2
Score = 112 bits (53), Expect = 1e-24
Identities = 113/147 (76%)
Strand = Plus / Minus
Query: 3 gtacagtttctgtcgctctgagccctggtagagattatcaggcatggcaaggttgggggt 62
||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||
Sbjct: 564 gtacagtttctgtcgctctgagctctggtagagattataaggaatggaaaggttgggggt 505
Query: 63 ttgagtcamtsgtaaaycmgtcaasacyacygactatcmacmsgmagamggtyaamtcmg 122
|||||| | | ||||| || || || || || ||| | | ||| ||| || || |
Sbjct: 504 ttgagtaaatggtaaataagtaaagactactgaatattaagaggaagaaggttaaatcag 445
Query: 123 amamcccmtsacatgatgamttcmtat 149
| | | ||||||||| ||| |||
Sbjct: 444 aaaaaaaatgacatgatgaattcatat 418
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.46 0.724 1.38
Gapped
Lambda K H
1.46 0.724 1.38
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2589
Number of Sequences: 1807
Number of extensions: 2589
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 2
length of query: 898
length of database: 10,358,551
effective HSP length: 15
effective length of query: 883
effective length of database: 10,331,446
effective search space: 9122666818
effective search space used: 9122666818
T: 0
A: 40
X1: 5 (10.5 bits)
X2: 14 (29.5 bits)
S1: 11 (23.7 bits)
S2: 47 (99.6 bits)